Bioinformatics Programming Using Python

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ISBN 10 : 818404898X
Pages : 492 pages
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Rating : 4.8/5 (184 users download)


Download Bioinformatics Programming Using Python by Mitchell L Model PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming Using Python by Mitchell L Model. This book is available in ePub and PDF format with a single click unlimited downloads.


Bioinformatics Programming Using Python

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Publisher : O'Reilly Media
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ISBN 10 : 059615450X
Pages : 528 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.9/5 (596 users download)


Download Bioinformatics Programming Using Python by Mitchell Model PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming Using Python by Mitchell Model. This book is available in ePub and PDF format with a single click unlimited downloads. Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter


Bioinformatics Programming in Python

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Publisher : John Wiley & Sons
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ISBN 10 : 9783527644902
Pages : 428 pages
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Rating : 4.4/5 (644 users download)


Download Bioinformatics Programming in Python by Ruediger-Marcus Flaig PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming in Python by Ruediger-Marcus Flaig. This book is available in ePub and PDF format with a single click unlimited downloads. This first introductory book designed to train novice programmers is based on a student course taught by the author, and has been optimized for biology students without previous experience in programming. By interspersing theory chapters with numerous small and large programming exercises, the author quickly shows readers how to do their own programming, and throughout uses anecdotes and real-life examples from the biosciences to 'spice up' the text. This practical book thus teaches essential programming skills for life scientists who want -- or need -- to write their own bioinformatics software tools.


Bioinformatics Programming Using Python

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Publisher : "O'Reilly Media, Inc."
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ISBN 10 : 1449382908
Pages : 528 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.4/5 (449 users download)


Download Bioinformatics Programming Using Python by Mitchell L Model PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming Using Python by Mitchell L Model. This book is available in ePub and PDF format with a single click unlimited downloads. Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter


Python Programming for Biology

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Publisher : Cambridge University Press
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ISBN 10 : 9780521895835
Pages : 711 pages
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Rating : 4.9/5 (895 users download)


Download Python Programming for Biology by Tim J. Stevens PDF/Ebook Free clicking on the below button will initiate the downloading process of Python Programming for Biology by Tim J. Stevens. This book is available in ePub and PDF format with a single click unlimited downloads. This book introduces Python as a powerful tool for the investigation of problems in computational biology, for novices and experienced programmers alike.


Python for Bioinformatics

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Publisher : Jones & Bartlett Publishers
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ISBN 10 : 9781449613075
Pages : 417 pages
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Rating : 4.1/5 (613 users download)


Download Python for Bioinformatics by Jason Kinser PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Bioinformatics by Jason Kinser. This book is available in ePub and PDF format with a single click unlimited downloads. Bioinformatics is a growing field that attracts researchers from many different backgrounds who are unfamiliar with the algorithms commonly used in the field. Python for Bioinformatics provides a clear introduction to the Python programming language and instructs beginners on the development of simple programming exercises . Ideal for those with some knowledge of computer programming languages, this book emphasizes Python syntax and methodologies. The text is divided into three complete sections; the first provides an explanation of general Python programming, the second includes a detailed discussion of the Python tools typically used in bioinformatics including clustering, associative memories, and mathematical analysis techniques, and the third section demonstrates how these tools are implemented through numerous applications.


Python for Bioinformatics

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Publisher : CRC Press
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ISBN 10 : 9781351976954
Pages : 424 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.7/5 (976 users download)


Download Python for Bioinformatics by Sebastian Bassi PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Bioinformatics by Sebastian Bassi. This book is available in ePub and PDF format with a single click unlimited downloads. In today's data driven biology, programming knowledge is essential in turning ideas into testable hypothesis. Based on the author’s extensive experience, Python for Bioinformatics, Second Edition helps biologists get to grips with the basics of software development. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language. This new edition is updated throughout to Python 3 and is designed not just to help scientists master the basics, but to do more in less time and in a reproducible way. New developments added in this edition include NoSQL databases, the Anaconda Python distribution, graphical libraries like Bokeh, and the use of Github for collaborative development.


Bioinformatics with Python Cookbook

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Publisher : Packt Publishing Ltd
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ISBN 10 : 9781789349986
Pages : 360 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.4/5 (349 users download)


Download Bioinformatics with Python Cookbook by Tiago Antao PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics with Python Cookbook by Tiago Antao. This book is available in ePub and PDF format with a single click unlimited downloads. Discover modern, next-generation sequencing libraries from Python ecosystem to analyze large amounts of biological data Key Features Perform complex bioinformatics analysis using the most important Python libraries and applications Implement next-generation sequencing, metagenomics, automating analysis, population genetics, and more Explore various statistical and machine learning techniques for bioinformatics data analysis Book Description Bioinformatics is an active research field that uses a range of simple-to-advanced computations to extract valuable information from biological data. This book covers next-generation sequencing, genomics, metagenomics, population genetics, phylogenetics, and proteomics. You'll learn modern programming techniques to analyze large amounts of biological data. With the help of real-world examples, you'll convert, analyze, and visualize datasets using various Python tools and libraries. This book will help you get a better understanding of working with a Galaxy server, which is the most widely used bioinformatics web-based pipeline system. This updated edition also includes advanced next-generation sequencing filtering techniques. You'll also explore topics such as SNP discovery using statistical approaches under high-performance computing frameworks such as Dask and Spark. By the end of this book, you'll be able to use and implement modern programming techniques and frameworks to deal with the ever-increasing deluge of bioinformatics data. What you will learn Learn how to process large next-generation sequencing (NGS) datasets Work with genomic dataset using the FASTQ, BAM, and VCF formats Learn to perform sequence comparison and phylogenetic reconstruction Perform complex analysis with protemics data Use Python to interact with Galaxy servers Use High-performance computing techniques with Dask and Spark Visualize protein dataset interactions using Cytoscape Use PCA and Decision Trees, two machine learning techniques, with biological datasets Who this book is for This book is for Data data Scientistsscientists, Bioinformatics bioinformatics analysts, researchers, and Python developers who want to address intermediate-to-advanced biological and bioinformatics problems using a recipe-based approach. Working knowledge of the Python programming language is expected.


Bioinformatic Algorithms

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Publisher : Academic Press
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ISBN 10 : 0128125209
Pages : 420 pages
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Rating : 4.2/5 (128 users download)


Download Bioinformatic Algorithms by Miguel Rocha PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatic Algorithms by Miguel Rocha. This book is available in ePub and PDF format with a single click unlimited downloads. Bioinformatics Algorithms: Design and Implementation in Python provides a comprehensive book on many of the most important bioinformatics problems, putting forward the best algorithms and showing how to implement them. The book focuses on the use of the Python programming language and its algorithms, which is quickly becoming the most popular language in the bioinformatics field. Readers will find the tools they need to improve their knowledge and skills regarding algorithm development and implementation, and will also uncover prototypes of bioinformatics applications that demonstrate the main principles underlying real world applications. Presents an ideal text for bioinformatics students with little to no knowledge of computer programming Based on over 12 years of pedagogical materials used by the authors in their own classrooms Features a companion website with downloadable codes and runnable examples (such as using Jupyter Notebooks) and exercises relating to the book


Bioinformatics Data Skills

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Publisher : "O'Reilly Media, Inc."
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ISBN 10 : 9781449367510
Pages : 538 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.6/5 (367 users download)


Download Bioinformatics Data Skills by Vince Buffalo PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Data Skills by Vince Buffalo. This book is available in ePub and PDF format with a single click unlimited downloads. Learn the data skills necessary for turning large sequencing datasets into reproducible and robust biological findings. With this practical guide, you’ll learn how to use freely available open source tools to extract meaning from large complex biological data sets. At no other point in human history has our ability to understand life’s complexities been so dependent on our skills to work with and analyze data. This intermediate-level book teaches the general computational and data skills you need to analyze biological data. If you have experience with a scripting language like Python, you’re ready to get started. Go from handling small problems with messy scripts to tackling large problems with clever methods and tools Process bioinformatics data with powerful Unix pipelines and data tools Learn how to use exploratory data analysis techniques in the R language Use efficient methods to work with genomic range data and range operations Work with common genomics data file formats like FASTA, FASTQ, SAM, and BAM Manage your bioinformatics project with the Git version control system Tackle tedious data processing tasks with with Bash scripts and Makefiles


Reproducible Bioinformatics with Python

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Publisher : O'Reilly Media
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ISBN 10 : 1098100883
Pages : 350 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.9/5 (98 users download)


Download Reproducible Bioinformatics with Python by Ken Youens-Clark PDF/Ebook Free clicking on the below button will initiate the downloading process of Reproducible Bioinformatics with Python by Ken Youens-Clark. This book is available in ePub and PDF format with a single click unlimited downloads. Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained--usually by students and postdoc researchers who've never learned basic programming skills. This practical guide shows how to exploit the best parts of Python for solving problems in biology while also creating documented, tested, reproducible software. Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates how to write effective Python code and how to use tests to write and refactor scientific programs. You'll learn the latest Python features and tools--such as linters, formatters, type checkers, and tests--to write documented and tested programs. Create command-line Python programs that document and validate parameters Write tests to verify refactor programs and confirm they're correct Address bioinformatics ideas using Python data structures (strings, lists, and sets) and modules such as Biopython Create reproducible shortcuts and workflows using makefiles Parse essential bioinformatics file formats such as FASTA, FASTQ, and SwissProt Find patterns of text using regular expressions Use higher-order functions in Python like filter() and map()


Bioinformatics in Mass Spectrometry

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Publisher : BoD – Books on Demand
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ISBN 10 : 9783735794093
Pages : 68 pages
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Rating : 4.9/5 (794 users download)


Download Bioinformatics in Mass Spectrometry by Volker Egelhofer PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics in Mass Spectrometry by Volker Egelhofer. This book is available in ePub and PDF format with a single click unlimited downloads. The aim of the book is to give the reader a basic insight of Mass spectrometry-based bioinformatics. In the past, Bioinformatics has been mostly classified as a bridge discipline between Informatics and Biology rather than an independent scientific discipline. But with the comprehensive accumulation of biological data and the resulting challenges Bioinformaticians concentrate more on their own research rather than simply serving as technologists for others. Nowadays, the focus in Bioinformatics is mainly on the development of sophisticated algorithms capable of extracting useful knowledge from large data sets by combining methods from statistics and artificial intelligence. This beginners guide will help to illustrate some of the common algorithmic problems occurring in typical high throughput mass spectrometry protein identification experiments. A general introduction to Python programming language including standard programming techniques and their role in problem solving will be provided.


Mastering Python for Bioinformatics

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Publisher : "O'Reilly Media, Inc."
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ISBN 10 : 9781098100858
Pages : 456 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.0/5 (1 users download)


Download Mastering Python for Bioinformatics by Ken Youens-Clark PDF/Ebook Free clicking on the below button will initiate the downloading process of Mastering Python for Bioinformatics by Ken Youens-Clark. This book is available in ePub and PDF format with a single click unlimited downloads. Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained--usually by students and researchers who've never learned basic programming skills. This practical guide shows postdoc bioinformatics professionals and students how to exploit the best parts of Python to solve problems in biology while creating documented, tested, reproducible software. Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates not only how to write effective Python code but also how to use tests to write and refactor scientific programs. You'll learn the latest Python features and toolsâ??including linters, formatters, type checkers, and testsâ??to create documented and tested programs. You'll also tackle 14 challenges in Rosalind, a problem-solving platform for learning bioinformatics and programming. Create command-line Python programs to document and validate parameters Write tests to verify refactor programs and confirm they're correct Address bioinformatics ideas using Python data structures and modules such as Biopython Create reproducible shortcuts and workflows using makefiles Parse essential bioinformatics file formats such as FASTA and FASTQ Find patterns of text using regular expressions Use higher-order functions in Python like filter(), map(), and reduce()


Python for Biologists

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Publisher : Createspace Independent Pub
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ISBN 10 : UCR:31210023746751
Pages : 229 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4./5 ( users download)


Download Python for Biologists by Martin Jones PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Biologists by Martin Jones. This book is available in ePub and PDF format with a single click unlimited downloads. Python for biologists is a complete programming course for beginners that will give you the skills you need to tackle common biological and bioinformatics problems.


Effective Python Development for Biologists

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Publisher : Createspace Independent Publishing Platform
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ISBN 10 : 153910303X
Pages : 300 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.3/5 (539 users download)


Download Effective Python Development for Biologists by Martin Jones PDF/Ebook Free clicking on the below button will initiate the downloading process of Effective Python Development for Biologists by Martin Jones. This book is available in ePub and PDF format with a single click unlimited downloads. Python is rapidly becoming the standard language for many talks in scientific research, and is particularly popular in biology and bioinformatics. One of the great strengths of Python is the ecosystem of tools and libraries that have grown up around it. This book introduces the novice biologist programmer to tools and techniques that make developing Python code easier and faster and will help you to write more reliable, performant programs. Written by a biologist, it focusses on solving the problems that students and researchers encounter every day: How do I make my program run faster? How can I be sure that my results are correct? How do I share this program with my colleagues? How can I speed up the process of writing my code? Chapters include: Environments for development - learn how you can take advantage of different tools for actually writing code, including those designed specifically for scientific work. Organising and sharing code - learn how Python's module and packaging system works, how to effectively reuse code across multiple projects, and how to share your programs with colleagues and the wider world. Testing - learn how automated testing can make your code more reliable, how to catch bugs before they impact your work, and how to edit code with confidence. Performance - learn how to make your code run quickly even on large datasets, how to understand the scaling behaviour of your code, and explore the trade offs involved in designing code. User interfaces - learn how to make your code more user friendly, how to design effective interfaces, and how to automate record-keeping with Python's logging system. About the author Martin started his programming career by learning Perl during the course of his PhD in evolutionary biology, and started teaching other people to program soon after. Since then he has taught introductory programming to hundreds of biologists, from undergraduates to PIs, and has maintained a philosophy that programming courses must be friendly, approachable, and practical. In his academic career, Martin mixed research and teaching at the University of Edinburgh, culminating in a two year stint as Lecturer in Bioinformatics. He now runs programming courses for biological researchers as a full time freelancer. Praise for Martin's previous books "Great, great book. I think this is the perfect book for any biologist to who wants to start learning to code with Python... I didn't know a command-line from a hole in the ground when I first opened up this book, and mere days later I was impressing my colleagues with my own DNA analysis programs." "Zero to writing useful programs in a weekend... Python for Biologists arrived last Thursday, 6/16/16, I spent the whole weekend glued to my laptop in a 2 1/2 day frenzy of coding, and I just finished it -- and came on Amazon to order the next one!" "One of the BEST coding books I've used in a long time. Direct applications in bioinformatics. I bought the advanced python book too." "The most useful guide to Python I've found...I've tried a few Python books, and this is by far the best for me."


Computing for Biologists

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Publisher : Cambridge University Press
Release Date :
ISBN 10 : 9781316061336
Pages : pages
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Rating : 4.6/5 (61 users download)


Download Computing for Biologists by Ran Libeskind-Hadas PDF/Ebook Free clicking on the below button will initiate the downloading process of Computing for Biologists by Ran Libeskind-Hadas. This book is available in ePub and PDF format with a single click unlimited downloads. Computing is revolutionizing the practice of biology. This book, which assumes no prior computing experience, provides students with the tools to write their own Python programs and to understand fundamental concepts in computational biology and bioinformatics. Each major part of the book begins with a compelling biological question, followed by the algorithmic ideas and programming tools necessary to explore it: the origins of pathogenicity are examined using gene finding, the evolutionary history of sex determination systems is studied using sequence alignment, and the origin of modern humans is addressed using phylogenetic methods. In addition to providing general programming skills, this book explores the design of efficient algorithms, simulation, NP-hardness, and the maximum likelihood method, among other key concepts and methods. Easy-to-read and designed to equip students with the skills to write programs for solving a range of biological problems, the book is accompanied by numerous programming exercises, available at www.cs.hmc.edu/CFB.


Advances in Bioinformatics and Computational Biology

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Publisher : Springer Nature
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ISBN 10 : 9783030657758
Pages : 272 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.5/5 (657 users download)


Download Advances in Bioinformatics and Computational Biology by João C. Setubal PDF/Ebook Free clicking on the below button will initiate the downloading process of Advances in Bioinformatics and Computational Biology by João C. Setubal. This book is available in ePub and PDF format with a single click unlimited downloads. This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2020, held in São Paulo, Brazil, in November 2020. Due to COVID-19 pandemic the conference was held virtually The 20 revised full papers and 5 short papers were carefully reviewed and selected from 45 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.


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