Python for Bioinformatics

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Publisher : CRC Press
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ISBN 10 : 9781351976954
Pages : 424 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.7/5 (976 users download)


Download Python for Bioinformatics by Sebastian Bassi PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Bioinformatics by Sebastian Bassi. This book is available in ePub and PDF format with a single click unlimited downloads. In today's data driven biology, programming knowledge is essential in turning ideas into testable hypothesis. Based on the author’s extensive experience, Python for Bioinformatics, Second Edition helps biologists get to grips with the basics of software development. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language. This new edition is updated throughout to Python 3 and is designed not just to help scientists master the basics, but to do more in less time and in a reproducible way. New developments added in this edition include NoSQL databases, the Anaconda Python distribution, graphical libraries like Bokeh, and the use of Github for collaborative development.


Python Programming for Biology

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Publisher : Cambridge University Press
Release Date :
ISBN 10 : 9780521895835
Pages : 711 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.9/5 (895 users download)


Download Python Programming for Biology by Tim J. Stevens PDF/Ebook Free clicking on the below button will initiate the downloading process of Python Programming for Biology by Tim J. Stevens. This book is available in ePub and PDF format with a single click unlimited downloads. This book introduces Python as a powerful tool for the investigation of problems in computational biology, for novices and experienced programmers alike.


Bioinformatics with Python Cookbook

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Publisher : Packt Publishing Ltd
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ISBN 10 : 9781789349986
Pages : 360 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.4/5 (349 users download)


Download Bioinformatics with Python Cookbook by Tiago Antao PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics with Python Cookbook by Tiago Antao. This book is available in ePub and PDF format with a single click unlimited downloads. Discover modern, next-generation sequencing libraries from Python ecosystem to analyze large amounts of biological data Key Features Perform complex bioinformatics analysis using the most important Python libraries and applications Implement next-generation sequencing, metagenomics, automating analysis, population genetics, and more Explore various statistical and machine learning techniques for bioinformatics data analysis Book Description Bioinformatics is an active research field that uses a range of simple-to-advanced computations to extract valuable information from biological data. This book covers next-generation sequencing, genomics, metagenomics, population genetics, phylogenetics, and proteomics. You'll learn modern programming techniques to analyze large amounts of biological data. With the help of real-world examples, you'll convert, analyze, and visualize datasets using various Python tools and libraries. This book will help you get a better understanding of working with a Galaxy server, which is the most widely used bioinformatics web-based pipeline system. This updated edition also includes advanced next-generation sequencing filtering techniques. You'll also explore topics such as SNP discovery using statistical approaches under high-performance computing frameworks such as Dask and Spark. By the end of this book, you'll be able to use and implement modern programming techniques and frameworks to deal with the ever-increasing deluge of bioinformatics data. What you will learn Learn how to process large next-generation sequencing (NGS) datasets Work with genomic dataset using the FASTQ, BAM, and VCF formats Learn to perform sequence comparison and phylogenetic reconstruction Perform complex analysis with protemics data Use Python to interact with Galaxy servers Use High-performance computing techniques with Dask and Spark Visualize protein dataset interactions using Cytoscape Use PCA and Decision Trees, two machine learning techniques, with biological datasets Who this book is for This book is for Data data Scientistsscientists, Bioinformatics bioinformatics analysts, researchers, and Python developers who want to address intermediate-to-advanced biological and bioinformatics problems using a recipe-based approach. Working knowledge of the Python programming language is expected.


Python for Bioinformatics

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Publisher : CRC Press
Release Date :
ISBN 10 : 9781584889304
Pages : 587 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.8/5 (889 users download)


Download Python for Bioinformatics by Sebastian Bassi PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Bioinformatics by Sebastian Bassi. This book is available in ePub and PDF format with a single click unlimited downloads. Programming knowledge is often necessary for finding a solution to a biological problem. Based on the author’s experience working for an agricultural biotechnology company, Python for Bioinformatics helps scientists solve their biological problems by helping them understand the basics of programming. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language. The book begins with a very basic introduction that teaches the principles of programming. It then introduces the Biopython package, which can be useful in solving life science problems. The next section covers sophisticated tools for bioinformatics, including relational database management systems and XML. The last part illustrates applications with source code, such as sequence manipulation, filtering vector contamination, calculating DNA melting temperature, parsing a genbank file, inferring splicing sites, and more. The appendices provide a wealth of supplementary information, including instructions for installing Python and Biopython and a Python language and style guide. By incorporating examples in biology as well as code fragments throughout, the author places a special emphasis on practice, encouraging readers to experiment with the code. He shows how to use Python and the Biopython package for building web applications, genomic annotation, data manipulation, and countless other applications.


Bioinformatics Programming Using Python

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Publisher :
Release Date :
ISBN 10 : 818404898X
Pages : 492 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.8/5 (184 users download)


Download Bioinformatics Programming Using Python by Mitchell L Model PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming Using Python by Mitchell L Model. This book is available in ePub and PDF format with a single click unlimited downloads.


Python for Bioinformatics

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Publisher : Jones & Bartlett Publishers
Release Date :
ISBN 10 : 9781449613075
Pages : 417 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.1/5 (613 users download)


Download Python for Bioinformatics by Jason Kinser PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Bioinformatics by Jason Kinser. This book is available in ePub and PDF format with a single click unlimited downloads. Bioinformatics is a growing field that attracts researchers from many different backgrounds who are unfamiliar with the algorithms commonly used in the field. Python for Bioinformatics provides a clear introduction to the Python programming language and instructs beginners on the development of simple programming exercises . Ideal for those with some knowledge of computer programming languages, this book emphasizes Python syntax and methodologies. The text is divided into three complete sections; the first provides an explanation of general Python programming, the second includes a detailed discussion of the Python tools typically used in bioinformatics including clustering, associative memories, and mathematical analysis techniques, and the third section demonstrates how these tools are implemented through numerous applications.


Bioinformatics Programming Using Python

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Publisher : "O'Reilly Media, Inc."
Release Date :
ISBN 10 : 1449382908
Pages : 528 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.4/5 (449 users download)


Download Bioinformatics Programming Using Python by Mitchell L Model PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming Using Python by Mitchell L Model. This book is available in ePub and PDF format with a single click unlimited downloads. Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter


Bioinformatics Algorithms

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Publisher : Academic Press
Release Date :
ISBN 10 : 9780128125212
Pages : 400 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.2/5 (125 users download)


Download Bioinformatics Algorithms by Miguel Rocha PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Algorithms by Miguel Rocha. This book is available in ePub and PDF format with a single click unlimited downloads. Bioinformatics Algorithms: Design and Implementation in Python provides a comprehensive book on many of the most important bioinformatics problems, putting forward the best algorithms and showing how to implement them. The book focuses on the use of the Python programming language and its algorithms, which is quickly becoming the most popular language in the bioinformatics field. Readers will find the tools they need to improve their knowledge and skills with regard to algorithm development and implementation, and will also uncover prototypes of bioinformatics applications that demonstrate the main principles underlying real world applications. Presents an ideal text for bioinformatics students with little to no knowledge of computer programming Based on over 12 years of pedagogical materials used by the authors in their own classrooms Features a companion website with downloadable codes and runnable examples (such as using Jupyter Notebooks) and exercises relating to the book


Bioinformatics Programming Using Python

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Publisher : O'Reilly Media
Release Date :
ISBN 10 : 059615450X
Pages : 528 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.9/5 (596 users download)


Download Bioinformatics Programming Using Python by Mitchell Model PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming Using Python by Mitchell Model. This book is available in ePub and PDF format with a single click unlimited downloads. Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter


Bioinformatics Programming in Python

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Publisher : John Wiley & Sons
Release Date :
ISBN 10 : 9783527644902
Pages : 428 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.4/5 (644 users download)


Download Bioinformatics Programming in Python by Ruediger-Marcus Flaig PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming in Python by Ruediger-Marcus Flaig. This book is available in ePub and PDF format with a single click unlimited downloads. This first introductory book designed to train novice programmers is based on a student course taught by the author, and has been optimized for biology students without previous experience in programming. By interspersing theory chapters with numerous small and large programming exercises, the author quickly shows readers how to do their own programming, and throughout uses anecdotes and real-life examples from the biosciences to 'spice up' the text. This practical book thus teaches essential programming skills for life scientists who want -- or need -- to write their own bioinformatics software tools.


Mastering Python for Bioinformatics

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Publisher : "O'Reilly Media, Inc."
Release Date :
ISBN 10 : 9781098100858
Pages : 456 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.0/5 (1 users download)


Download Mastering Python for Bioinformatics by Ken Youens-Clark PDF/Ebook Free clicking on the below button will initiate the downloading process of Mastering Python for Bioinformatics by Ken Youens-Clark. This book is available in ePub and PDF format with a single click unlimited downloads. Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained--usually by students and researchers who've never learned basic programming skills. This practical guide shows postdoc bioinformatics professionals and students how to exploit the best parts of Python to solve problems in biology while creating documented, tested, reproducible software. Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates not only how to write effective Python code but also how to use tests to write and refactor scientific programs. You'll learn the latest Python features and toolsâ??including linters, formatters, type checkers, and testsâ??to create documented and tested programs. You'll also tackle 14 challenges in Rosalind, a problem-solving platform for learning bioinformatics and programming. Create command-line Python programs to document and validate parameters Write tests to verify refactor programs and confirm they're correct Address bioinformatics ideas using Python data structures and modules such as Biopython Create reproducible shortcuts and workflows using makefiles Parse essential bioinformatics file formats such as FASTA and FASTQ Find patterns of text using regular expressions Use higher-order functions in Python like filter(), map(), and reduce()


Reproducible Bioinformatics with Python

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Publisher : O'Reilly Media
Release Date :
ISBN 10 : 1098100883
Pages : 350 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.9/5 (98 users download)


Download Reproducible Bioinformatics with Python by Ken Youens-Clark PDF/Ebook Free clicking on the below button will initiate the downloading process of Reproducible Bioinformatics with Python by Ken Youens-Clark. This book is available in ePub and PDF format with a single click unlimited downloads. Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained--usually by students and postdoc researchers who've never learned basic programming skills. This practical guide shows how to exploit the best parts of Python for solving problems in biology while also creating documented, tested, reproducible software. Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates how to write effective Python code and how to use tests to write and refactor scientific programs. You'll learn the latest Python features and tools--such as linters, formatters, type checkers, and tests--to write documented and tested programs. Create command-line Python programs that document and validate parameters Write tests to verify refactor programs and confirm they're correct Address bioinformatics ideas using Python data structures (strings, lists, and sets) and modules such as Biopython Create reproducible shortcuts and workflows using makefiles Parse essential bioinformatics file formats such as FASTA, FASTQ, and SwissProt Find patterns of text using regular expressions Use higher-order functions in Python like filter() and map()


Python for Bioinformatics - Solutions Manual

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Publisher :
Release Date :
ISBN 10 : 1439825548
Pages : pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.3/5 (439 users download)


Download Python for Bioinformatics - Solutions Manual by Taylor & Francis Group PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Bioinformatics - Solutions Manual by Taylor & Francis Group. This book is available in ePub and PDF format with a single click unlimited downloads. Programming knowledge is often necessary for finding a solution to a biological problem. Based on the author's experience working for an agricultural biotechnology company, Python for Bioinformatics helps scientists solve their biological problems by helping them understand the basics of programming. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language. The book begins with a very basic introduction that teaches the principles of programming. It then introduces the Biopython package, which can be useful in solving life science problems. The next section covers sophisticated tools for bioinformatics, including relational database management systems and XML. The last part illustrates applications with source code, such as sequence manipulation, filtering vector contamination, calculating DNA melting temperature, parsing a genbank file, inferring splicing sites, and more. The appendices provide a wealth of supplementary information, including instructions for installing Python and Biopython and a Python language and style guide. By incorporating examples in biology as well as code fragments throughout, the author places a special emphasis on practice, encouraging readers to experiment with the code. He shows how to use Python and the Biopython package for building web applications, genomic annotation, data manipulation, and countless other applications.


Computing for Biologists

Author :
Publisher : Cambridge University Press
Release Date :
ISBN 10 : 9781316061336
Pages : pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.6/5 (61 users download)


Download Computing for Biologists by Ran Libeskind-Hadas PDF/Ebook Free clicking on the below button will initiate the downloading process of Computing for Biologists by Ran Libeskind-Hadas. This book is available in ePub and PDF format with a single click unlimited downloads. Computing is revolutionizing the practice of biology. This book, which assumes no prior computing experience, provides students with the tools to write their own Python programs and to understand fundamental concepts in computational biology and bioinformatics. Each major part of the book begins with a compelling biological question, followed by the algorithmic ideas and programming tools necessary to explore it: the origins of pathogenicity are examined using gene finding, the evolutionary history of sex determination systems is studied using sequence alignment, and the origin of modern humans is addressed using phylogenetic methods. In addition to providing general programming skills, this book explores the design of efficient algorithms, simulation, NP-hardness, and the maximum likelihood method, among other key concepts and methods. Easy-to-read and designed to equip students with the skills to write programs for solving a range of biological problems, the book is accompanied by numerous programming exercises, available at www.cs.hmc.edu/CFB.


Python in Neuroscience

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Publisher : Frontiers Media SA
Release Date :
ISBN 10 : 9782889196081
Pages : pages
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Rating : 4.9/5 (196 users download)


Download Python in Neuroscience by Eilif Muller PDF/Ebook Free clicking on the below button will initiate the downloading process of Python in Neuroscience by Eilif Muller. This book is available in ePub and PDF format with a single click unlimited downloads. Python is rapidly becoming the de facto standard language for systems integration. Python has a large user and developer-base external to theneuroscience community, and a vast module library that facilitates rapid and maintainable development of complex and intricate systems. In this Research Topic, we highlight recent efforts to develop Python modules for the domain of neuroscience software and neuroinformatics: - simulators and simulator interfaces - data collection and analysis - sharing, re-use, storage and databasing of models and data - stimulus generation - parameter search and optimization - visualization - VLSI hardware interfacing. Moreover, we seek to provide a representative overview of existing mature Python modules for neuroscience and neuroinformatics, to demonstrate a critical mass and show that Python is an appropriate choice of interpreter interface for future neuroscience software development.


Advanced Python for Biologists

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Publisher : Createspace Independent Pub
Release Date :
ISBN 10 : 1495244377
Pages : 267 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.9/5 (495 users download)


Download Advanced Python for Biologists by Martin O. Jones PDF/Ebook Free clicking on the below button will initiate the downloading process of Advanced Python for Biologists by Martin O. Jones. This book is available in ePub and PDF format with a single click unlimited downloads. Advanced Python for Biologists is a programming course for workers in biology and bioinformatics who want to develop their programming skills. It starts with the basic Python knowledge outlined in Python for Biologists and introduces advanced Python tools and techniques with biological examples. You'll learn: - How to use object-oriented programming to model biological entities - How to write more robust code and programs by using Python's exception system - How to test your code using the unit testing framework - How to transform data using Python's comprehensions - How to write flexible functions and applications using functional programming - How to use Python's iteration framework to extend your own object and functions Advanced Python for Biologists is written with an emphasis on practical problem-solving and uses everyday biological examples throughout. Each section contains exercises along with solutions and detailed discussion.


Bioinformatics with Python Cookbook

Author :
Publisher : Packt Publishing Ltd
Release Date :
ISBN 10 : 9781783558650
Pages : 306 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.5/5 (558 users download)


Download Bioinformatics with Python Cookbook by Tiago Antao PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics with Python Cookbook by Tiago Antao. This book is available in ePub and PDF format with a single click unlimited downloads. If you are either a computational biologist or a Python programmer, you will probably relate to the expression "explosive growth, exciting times". Python is arguably the main programming language for big data, and the deluge of data in biology, mostly from genomics and proteomics, makes bioinformatics one of the most exciting fields in data science. Using the hands-on recipes in this book, you'll be able to do practical research and analysis in computational biology with Python. We cover modern, next-generation sequencing libraries and explore real-world examples on how to handle real data. The main focus of the book is the practical application of bioinformatics, but we also cover modern programming techniques and frameworks to deal with the ever increasing deluge of bioinformatics data.


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