Python Programming for Biology

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Publisher : Cambridge University Press
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ISBN 10 : 9780521895835
Pages : 711 pages
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Rating : 4.9/5 (895 users download)


Download Python Programming for Biology by Tim J. Stevens PDF/Ebook Free clicking on the below button will initiate the downloading process of Python Programming for Biology by Tim J. Stevens. This book is available in ePub and PDF format with a single click unlimited downloads. This book introduces Python as a powerful tool for the investigation of problems in computational biology, for novices and experienced programmers alike.


Python for Biologists

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Publisher : Createspace Independent Pub
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ISBN 10 : UCR:31210023746751
Pages : 229 pages
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Rating : 4./5 ( users download)


Download Python for Biologists by Martin Jones PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Biologists by Martin Jones. This book is available in ePub and PDF format with a single click unlimited downloads. Python for biologists is a complete programming course for beginners that will give you the skills you need to tackle common biological and bioinformatics problems.


Computing for Biologists

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Publisher : Cambridge University Press
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ISBN 10 : 9781107042827
Pages : 217 pages
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Rating : 4.4/5 (42 users download)


Download Computing for Biologists by Ran Libeskind-Hadas PDF/Ebook Free clicking on the below button will initiate the downloading process of Computing for Biologists by Ran Libeskind-Hadas. This book is available in ePub and PDF format with a single click unlimited downloads. Teaches life science students how to use Python programming and computational problem-solving in the context of compelling biological applications.


Managing Your Biological Data with Python

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Publisher : CRC Press
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ISBN 10 : 9781439880937
Pages : 560 pages
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Rating : 4.8/5 (88 users download)


Download Managing Your Biological Data with Python by Allegra Via PDF/Ebook Free clicking on the below button will initiate the downloading process of Managing Your Biological Data with Python by Allegra Via. This book is available in ePub and PDF format with a single click unlimited downloads. Take Control of Your Data and Use Python with Confidence Requiring no prior programming experience, Managing Your Biological Data with Python empowers biologists and other life scientists to work with biological data on their own using the Python language. The book teaches them not only how to program but also how to manage their data. It shows how to read data from files in different formats, analyze and manipulate the data, and write the results to a file or computer screen. The first part of the text introduces the Python language and teaches readers how to write their first programs. The second part presents the basic elements of the language, enabling readers to write small programs independently. The third part explains how to create bigger programs using techniques to write well-organized, efficient, and error-free code. The fourth part on data visualization shows how to plot data and draw a figure for an article or slide presentation. The fifth part covers the Biopython programming library for reading and writing several biological file formats, querying the NCBI online databases, and retrieving biological records from the web. The last part provides a cookbook of 20 specific programming "recipes," ranging from secondary structure prediction and multiple sequence alignment analyses to superimposing protein three-dimensional structures. Tailoring the programming topics to the everyday needs of biologists, the book helps them easily analyze data and ultimately make better discoveries. Every piece of code in the text is aimed at solving real biological problems.


Python for the Life Sciences

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Publisher : Apress
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ISBN 10 : 9781484245231
Pages : 376 pages
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Rating : 4.4/5 (245 users download)


Download Python for the Life Sciences by Alexander Lancaster PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for the Life Sciences by Alexander Lancaster. This book is available in ePub and PDF format with a single click unlimited downloads. Treat yourself to a lively, intuitive, and easy-to-follow introduction to computer programming in Python. The book was written specifically for biologists with little or no prior experience of writing code - with the goal of giving them not only a foundation in Python programming, but also the confidence and inspiration to start using Python in their own research. Virtually all of the examples in the book are drawn from across a wide spectrum of life science research, from simple biochemical calculations and sequence analysis, to modeling the dynamic interactions of genes and proteins in cells, or the drift of genes in an evolving population. Best of all, Python for the Life Sciences shows you how to implement all of these projects in Python, one of the most popular programming languages for scientific computing. If you are a life scientist interested in learning Python to jump-start your research, this is the book for you. What You'll Learn Write Python scripts to automate your lab calculations Search for important motifs in genome sequences Use object-oriented programming with Python Study mining interaction network data for patterns Review dynamic modeling of biochemical switches Who This Book Is For Life scientists with little or no programming experience, including undergraduate and graduate students, postdoctoral researchers in academia and industry, medical professionals, and teachers/lecturers. “A comprehensive introduction to using Python for computational biology... A lovely book with humor and perspective” -- John Novembre, Associate Professor of Human Genetics, University of Chicago and MacArthur Fellow “Fun, entertaining, witty and darn useful. A magical portal to the big data revolution” -- Sandro Santagata, Assistant Professor in Pathology, Harvard Medical School “Alex and Gordon’s enthusiasm for Python is contagious” -- Glenys Thomson Professor of Integrative Biology, University of California, Berkeley


Effective Python Development for Biologists

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Publisher : Createspace Independent Publishing Platform
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ISBN 10 : 153910303X
Pages : 300 pages
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Rating : 4.3/5 (539 users download)


Download Effective Python Development for Biologists by Martin Jones PDF/Ebook Free clicking on the below button will initiate the downloading process of Effective Python Development for Biologists by Martin Jones. This book is available in ePub and PDF format with a single click unlimited downloads. Python is rapidly becoming the standard language for many talks in scientific research, and is particularly popular in biology and bioinformatics. One of the great strengths of Python is the ecosystem of tools and libraries that have grown up around it. This book introduces the novice biologist programmer to tools and techniques that make developing Python code easier and faster and will help you to write more reliable, performant programs. Written by a biologist, it focusses on solving the problems that students and researchers encounter every day: How do I make my program run faster? How can I be sure that my results are correct? How do I share this program with my colleagues? How can I speed up the process of writing my code? Chapters include: Environments for development - learn how you can take advantage of different tools for actually writing code, including those designed specifically for scientific work. Organising and sharing code - learn how Python's module and packaging system works, how to effectively reuse code across multiple projects, and how to share your programs with colleagues and the wider world. Testing - learn how automated testing can make your code more reliable, how to catch bugs before they impact your work, and how to edit code with confidence. Performance - learn how to make your code run quickly even on large datasets, how to understand the scaling behaviour of your code, and explore the trade offs involved in designing code. User interfaces - learn how to make your code more user friendly, how to design effective interfaces, and how to automate record-keeping with Python's logging system. About the author Martin started his programming career by learning Perl during the course of his PhD in evolutionary biology, and started teaching other people to program soon after. Since then he has taught introductory programming to hundreds of biologists, from undergraduates to PIs, and has maintained a philosophy that programming courses must be friendly, approachable, and practical. In his academic career, Martin mixed research and teaching at the University of Edinburgh, culminating in a two year stint as Lecturer in Bioinformatics. He now runs programming courses for biological researchers as a full time freelancer. Praise for Martin's previous books "Great, great book. I think this is the perfect book for any biologist to who wants to start learning to code with Python... I didn't know a command-line from a hole in the ground when I first opened up this book, and mere days later I was impressing my colleagues with my own DNA analysis programs." "Zero to writing useful programs in a weekend... Python for Biologists arrived last Thursday, 6/16/16, I spent the whole weekend glued to my laptop in a 2 1/2 day frenzy of coding, and I just finished it -- and came on Amazon to order the next one!" "One of the BEST coding books I've used in a long time. Direct applications in bioinformatics. I bought the advanced python book too." "The most useful guide to Python I've found...I've tried a few Python books, and this is by far the best for me."


Bioinformatics Programming Using Python

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Publisher :
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ISBN 10 : 818404898X
Pages : 492 pages
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Rating : 4.8/5 (184 users download)


Download Bioinformatics Programming Using Python by Mitchell L Model PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming Using Python by Mitchell L Model. This book is available in ePub and PDF format with a single click unlimited downloads.


Bioinformatics Programming Using Python

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Publisher : "O'Reilly Media, Inc."
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ISBN 10 : 1449382908
Pages : 528 pages
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Rating : 4.4/5 (449 users download)


Download Bioinformatics Programming Using Python by Mitchell L Model PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming Using Python by Mitchell L Model. This book is available in ePub and PDF format with a single click unlimited downloads. Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter


Foundations of Theoretical Approaches in Systems Biology

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Publisher : Frontiers Media SA
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ISBN 10 : 9782889456833
Pages : pages
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Rating : 4.5/5 (456 users download)


Download Foundations of Theoretical Approaches in Systems Biology by Alberto Marin-Sanguino PDF/Ebook Free clicking on the below button will initiate the downloading process of Foundations of Theoretical Approaches in Systems Biology by Alberto Marin-Sanguino. This book is available in ePub and PDF format with a single click unlimited downloads. If biology in the 20th century was characterized by an explosion of new technologies and experimental methods, that of the 21st has seen an equally exuberant proliferation of mathematical and computational methods that attempt to systematize and explain the abundance of available data. As we live through the consolidation of a new paradigm where experimental data goes hand in hand with computational analysis, we contemplate the challenge of fusing these two aspects of the new biology into a consistent theoretical framework. Whether systems biology will survive as a field or be washed away by the tides of future fads will ultimately depend on its success to achieve this type of synthesis. The famous quote attributed to Kurt Lewin comes to mind: "there is nothing more practical than a good theory". This book presents a wide assortment of articles on systems biology in an attempt to capture the variety of current methods in systems biology and show how they can help to find answers to the challenges of modern biology.


Advanced Python for Biologists

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Publisher : Createspace Independent Pub
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ISBN 10 : 1495244377
Pages : 267 pages
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Rating : 4.9/5 (495 users download)


Download Advanced Python for Biologists by Martin O. Jones PDF/Ebook Free clicking on the below button will initiate the downloading process of Advanced Python for Biologists by Martin O. Jones. This book is available in ePub and PDF format with a single click unlimited downloads. Advanced Python for Biologists is a programming course for workers in biology and bioinformatics who want to develop their programming skills. It starts with the basic Python knowledge outlined in Python for Biologists and introduces advanced Python tools and techniques with biological examples. You'll learn: - How to use object-oriented programming to model biological entities - How to write more robust code and programs by using Python's exception system - How to test your code using the unit testing framework - How to transform data using Python's comprehensions - How to write flexible functions and applications using functional programming - How to use Python's iteration framework to extend your own object and functions Advanced Python for Biologists is written with an emphasis on practical problem-solving and uses everyday biological examples throughout. Each section contains exercises along with solutions and detailed discussion.


Computing for Biologists

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Publisher :
Release Date :
ISBN 10 : 1316054233
Pages : 220 pages
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Rating : 4.1/5 (316 users download)


Download Computing for Biologists by Ran Libeskind-Hadas PDF/Ebook Free clicking on the below button will initiate the downloading process of Computing for Biologists by Ran Libeskind-Hadas. This book is available in ePub and PDF format with a single click unlimited downloads. Computing is revolutionizing the practice of biology. This book, which assumes no prior computing experience, provides students with the tools to write their own Python programs and to understand fundamental concepts in computational biology and bioinformatics. Each major part of the book begins with a compelling biological question, followed by the algorithmic ideas and programming tools necessary to explore it: the origins of pathogenicity are examined using gene finding, the evolutionary history of sex determination systems is studied using sequence alignment, and the origin of modern humans is addressed using phylogenetic methods. In addition to providing general programming skills, this book explores the design of efficient algorithms, simulation, NP-hardness, and the maximum likelihood method, among other key concepts and methods. Easy-to-read and designed to equip students with the skills to write programs for solving a range of biological problems, the book is accompanied by numerous programming exercises, available at www.cs.hmc.edu/CFB.


Bioinformatics Programming in Python

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Publisher : John Wiley & Sons
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ISBN 10 : 9783527644902
Pages : 428 pages
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Rating : 4.4/5 (644 users download)


Download Bioinformatics Programming in Python by Ruediger-Marcus Flaig PDF/Ebook Free clicking on the below button will initiate the downloading process of Bioinformatics Programming in Python by Ruediger-Marcus Flaig. This book is available in ePub and PDF format with a single click unlimited downloads. This first introductory book designed to train novice programmers is based on a student course taught by the author, and has been optimized for biology students without previous experience in programming. By interspersing theory chapters with numerous small and large programming exercises, the author quickly shows readers how to do their own programming, and throughout uses anecdotes and real-life examples from the biosciences to 'spice up' the text. This practical book thus teaches essential programming skills for life scientists who want -- or need -- to write their own bioinformatics software tools.


Python for Bioinformatics

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Publisher : CRC Press
Release Date :
ISBN 10 : 9781351976954
Pages : 424 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.7/5 (976 users download)


Download Python for Bioinformatics by Sebastian Bassi PDF/Ebook Free clicking on the below button will initiate the downloading process of Python for Bioinformatics by Sebastian Bassi. This book is available in ePub and PDF format with a single click unlimited downloads. In today's data driven biology, programming knowledge is essential in turning ideas into testable hypothesis. Based on the author’s extensive experience, Python for Bioinformatics, Second Edition helps biologists get to grips with the basics of software development. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language. This new edition is updated throughout to Python 3 and is designed not just to help scientists master the basics, but to do more in less time and in a reproducible way. New developments added in this edition include NoSQL databases, the Anaconda Python distribution, graphical libraries like Bokeh, and the use of Github for collaborative development.


Integer Linear Programming in Computational and Systems Biology

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Publisher : Cambridge University Press
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ISBN 10 : 9781108421768
Pages : 428 pages
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Rating : 4.2/5 (421 users download)


Download Integer Linear Programming in Computational and Systems Biology by Dan Gusfield PDF/Ebook Free clicking on the below button will initiate the downloading process of Integer Linear Programming in Computational and Systems Biology by Dan Gusfield. This book is available in ePub and PDF format with a single click unlimited downloads. This hands-on tutorial text for non-experts demonstrates biological applications of a versatile modeling and optimization technique.


Hands on Data Science for Biologists Using Python

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Publisher : CRC Press
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ISBN 10 : 9781000345483
Pages : 286 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.4/5 (345 users download)


Download Hands on Data Science for Biologists Using Python by Yasha Hasija PDF/Ebook Free clicking on the below button will initiate the downloading process of Hands on Data Science for Biologists Using Python by Yasha Hasija. This book is available in ePub and PDF format with a single click unlimited downloads. Hands-on Data Science for Biologists using Python has been conceptualized to address the massive data handling needs of modern-day biologists. With the advent of high throughput technologies and consequent availability of omics data, biological science has become a data-intensive field. This hands-on textbook has been written with the inception of easing data analysis by providing an interactive, problem-based instructional approach in Python programming language. The book starts with an introduction to Python and steadily delves into scrupulous techniques of data handling, preprocessing, and visualization. The book concludes with machine learning algorithms and their applications in biological data science. Each topic has an intuitive explanation of concepts and is accompanied with biological examples. Features of this book: The book contains standard templates for data analysis using Python, suitable for beginners as well as advanced learners. This book shows working implementations of data handling and machine learning algorithms using real-life biological datasets and problems, such as gene expression analysis; disease prediction; image recognition; SNP association with phenotypes and diseases. Considering the importance of visualization for data interpretation, especially in biological systems, there is a dedicated chapter for the ease of data visualization and plotting. Every chapter is designed to be interactive and is accompanied with Jupyter notebook to prompt readers to practice in their local systems. Other avant-garde component of the book is the inclusion of a machine learning project, wherein various machine learning algorithms are applied for the identification of genes associated with age-related disorders. A systematic understanding of data analysis steps has always been an important element for biological research. This book is a readily accessible resource that can be used as a handbook for data analysis, as well as a platter of standard code templates for building models.


Managing Your Biological Data with Python

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Publisher : CRC Press
Release Date :
ISBN 10 : 9781439880944
Pages : 560 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.8/5 (88 users download)


Download Managing Your Biological Data with Python by Allegra Via PDF/Ebook Free clicking on the below button will initiate the downloading process of Managing Your Biological Data with Python by Allegra Via. This book is available in ePub and PDF format with a single click unlimited downloads. Take Control of Your Data and Use Python with ConfidenceRequiring no prior programming experience, Managing Your Biological Data with Python empowers biologists and other life scientists to work with biological data on their own using the Python language. The book teaches them not only how to program but also how to manage their data. It shows how


Explorations in Computing

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Publisher : CRC Press
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ISBN 10 : 9781466572454
Pages : 439 pages
File Format : PDF, EPUB, TEXT, KINDLE or MOBI
Rating : 4.7/5 (572 users download)


Download Explorations in Computing by John S. Conery PDF/Ebook Free clicking on the below button will initiate the downloading process of Explorations in Computing by John S. Conery. This book is available in ePub and PDF format with a single click unlimited downloads. An Active Learning Approach to Teaching the Main Ideas in Computing Explorations in Computing: An Introduction to Computer Science and Python Programming teaches computer science students how to use programming skills to explore fundamental concepts and computational approaches to solving problems. Tbook gives beginning students an introduction to


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